• Click on the titles of individual talks for abstract, slides and archived video.

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Coffee & Check-In
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Opening Remarks
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The Current State of Mutation Detection and Prospects for Long Read Sequencing
Jared Simpson (Ontario Institute for Cancer Research)
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Modeling Cancer Evolution from Genomic Data
Niko Beerenwinkel (ETH Zürich)
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Break
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Interaction-based Methods for Uncovering Genes Functionally Important in Cancers
Mona Singh (Princeton University)
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Joint Analysis of Multiple Cancer Types for Revealing Disease-Specific Genomic Events
Ron Shamir (Tel Aviv University) & David Amar (Tel Aviv University)
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Lunch
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Somatic Mutations that Alter RNA Splicing in Human Cancers
Angela Brooks (UC Santa Cruz)
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Algorithms for Population Genomics and Cancer Genomics
Serafim Batzoglou (Stanford University)
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Break
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Mechanisms of Amplification in Tumor Genomes
Vineet Bafna (UC San Diego)
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Afternoon Discussion
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Reception
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Coffee & Check-In
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Challenges and Opportunities in Intelligent Molecular Medicine
Igor Jurisica (University of Toronto)
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Fast and Scalable Inference of Cancer Cell Lineages Using Multi-sample Deep Sequencing Somatic SNVs
Victoria Popic (Stanford University)
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Molecular Data Integration for Precision Medicine in Breast Cancer
Laura Van 'T Veer (UCSF)
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Break
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Molecular Characterization for Diagnoses and Treatment
David Haussler (UC Santa Cruz)
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CoMEt: A Statistical Approach to Identify Combinations of Mutually Exclusive Alterations in Cancer
Max Leiserson, Brown University
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Lunch
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Finding Mutated Subnetworks Associated with Survival in Cancer
Fabio Vandin (University of Padova)
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Diverse High Throughput Technologies in Cancer Research and Synthetic Biology
Zohar Yakhini (Agilent Technologies and Technion)
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Break
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The Copy Number Transformation Problem
Meirav Zehavi (Technion Israel Institute of Technology) 
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Inferring Selective Advantage Relationships to Reconstruct Cancer Progression Models
Marco Antoniotti (Università degli Studi di Milano Bicocca)
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Afternoon Discussion
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Coffee & Check-In
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Toward Pathway-and Pancancer-Guided Interpretation of an Individual’s Cancer Genome
Josh Stuart (UC Santa Cruz)
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Somatic Structural Variation Discovery in Multiple Cancer Genomes
Iman Hajirasouliha (Stanford University)
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Towards Inference of Fitness Landscapes in Human Cancer
Sohrab Shah (BC Cancer Research Agency)
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Break
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Tumor Evolution - Simplicity and Constraints
Paul Spellman (Oregon Health and Science University)
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Inference of Personalized Drug Targets via Network Propagation
Dana Silverbush (Tel Aviv University)
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Lunch
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Quantifying the Evolutionary Dynamics of Human Tumor Growth and Progression
Christina Curtis (Stanford University)
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Complexity Issues in Rearrangement Evolution
Chris Greenman (University of East Anglia)
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Break
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Inferring Evolution by Copy Number Variations in Tumor Cell Populations
Russell Schwartz (Carnegie Mellon University)
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Afternoon Discussion
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Coffee & Check-In
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Interpreting Cancer Genomes with Network Knowledge
Trey Ideker (UC San Diego)
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Multi-State Perfect Phylogeny Mixture Deconvolution and Applications to Cancer Sequencing
Mohammed El Kebir, Brown University
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Optimizing Combination Cancer Therapy Based on Single Cell Analysis
Sylvia Plevritis (Stanford University)
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Break
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Synthetic Rescue Determinants of Resistance and Response to Cancer Therapy
Eytan Ruppin (University of Maryland)
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Survival Time Prediction from Mutation Profiles Using Gene Networks
Marine Le Morvan (Mines ParisTech)
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Lunch
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Modeling Mutational Patterns in Tumor Genomic Data
Ewa Szczurek (ETH Zürich)
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Insights To Treatment Resistance and Precision Therapy In Prostate Cancer
Colin Collins (Vancouver Prostate Center)
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Break
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Mutual Exclusivity of Mutations Across Different Cancer Types - A Molecular Network Perspective
Teresa Przytycka (National Institutes of Health)
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Afternoon Discussion
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Coffee & Check-In
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Detection and Systems Level Identification of Expressed, Clone Specific Structural Alterations that Drive the Tumor Phenotype
Cenk Sahinalp (Indiana University)
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BitPhylogeny: A Probabilistic Framework for Reconstructing Intra-tumor Phylogenies
Thomas Sakoparnig (University of Basel, Biozentrum)
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Expression Analysis of Tumors Based on Patterns in Alternative Splicing
Elizabeth Purdom, UC Berkeley
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Break
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Modeling the Impact of Somatic Alterations in Human Cancers
Hatice Ulku Osmanbeyoglu, Memorial Sloan Kettering Cancer Center
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Rank-Based Representations to Learn from Omics Data
Jean-Philippe Vert (MINES ParisTech)
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Closing Discussion