Playlist: 17 videos Boot Camps, Seminars, Courses, Tutorials

Algorithmic Challenges in Genomics Boot Camp

Jan. 19 – Jan. 22, 2016

The Boot Camp is intended to acquaint program participants with the key themes of the program.

Fundamentals of Stringology
Dan Gusfield (UC Davis) and Mike Waterman (University of Southern California)

Fundamental Algorithms...

1:0:38

Fundamentals of Stringology I: Recap on Exact Pattern Matching and Alignment Algorithms

Dan Gusfield, UC Davis
Algorithmic Challenges in Genomics Boot Camp
https://simons.berkeley.edu/talks/dan-gusfield-2016-01-19-1
Visit talk page
0:51:41

Fundamentals of Stringology II: Probability and Statistics for Sequence Alignment

Mike Waterman, University of Southern California
Algorithmic Challenges in Genomics Boot Camp
https://simons.berkeley.edu/talks/mike-waterman-2016-01-19
Visit talk page
1:0:42

Fundamentals of Stringology III: Suffix Tress and Suffix Arrays

Dan Gusfield, UC Davis
Algorithmic Challenges in Genomics Boot Camp
https://simons.berkeley.edu/talks/dan-gusfield-2016-01-19-2
Visit talk page
1:7:0

Fundamentals of Stringology IV: The Burrows-Wheeler Transform

Dan Gusfield, UC Davis
Algorithmic Challenges in Genomics Boot Camp
https://simons.berkeley.edu/talks/dan-gusfield-2016-01-19-3
Visit talk page
1:4:38

Fundamental Algorithms in Deep Sequencing I: Assembly

Pavel Pevzner, UC San Diego
Algorithmic Challenges in Genomics Boot Camp
https://simons.berkeley.edu/talks/pavel-pevzner-2016-01-19
Visit talk page
1:19:56

Fundamental Algorithms in Deep Sequencing II: Mapping/Alignment

Lior Pachter, UC Berkeley
Algorithmic Challenges in Genomics Boot Camp
https://simons.berkeley.edu/talks/lior-pachter-2016-01-20
Visit talk page
1:29:23

Fundamental Algorithms in Deep Sequencing III: Genomic Compression: Storage, Transmission, and Analytics

Noah M. Daniels, Massachusetts Institute of Technology
Algorithmic Challenges in Genomics Boot Camp
https://simons.berkeley.edu/talks/noah-daniels-2016-01-20
Visit talk page
1:31:25

Introduction to Cancer Bioinformatics I: Inferring Genomic Variation from Tumor Sequencing Data

Ben Raphael, Brown University
Niko Beerenwinkel, ETH Zürich
Algorithmic Challenges in Genomics Boot Camp
https://simons.berkeley.edu/talks/ben-raphael-and-niko-beerenwinkel-2016-01-20-01
Visit talk page
1:3:20

Introduction to Cancer Bioinformatics II: Tumor Phylogeny

Ben Raphael, Brown University
Niko Beerenwinkel, ETH Zürich
Algorithmic Challenges in Genomics Boot Camp
https://simons.berkeley.edu/talks/ben-raphael-and-niko-beerenwinkel-2016-01-20-02
Visit talk page
0:56:2

Introduction to Cancer Bioinformatics III: Cancer Progression Networks

Niko Beerenwinkel, ETH Zürich
Algorithmic Challenges in Genomics Boot Camp
https://simons.berkeley.edu/talks/niko-beerenwinkel-2016-01-21
Visit talk page