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Computation-Intensive Probabilistic and Statistical Methods for Large-Scale Population Genomics
Program
Evolutionary Biology and the Theory of Computing
Location
Calvin Lab Auditorium
Date
Tuesday, Feb. 18
–
Friday, Feb. 21, 2014
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The Workshop
Schedule
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Click on the titles of individual talks for abstract, slides and archived video.
All events take place in the Calvin Lab Auditorium.
Tuesday, Feb. 18, 2014
8:30
–
8:50 a.m.
Coffee and Check-In
8:50
–
9 a.m.
Opening Remarks
9
–
9:45 a.m.
A Population Reference Graph for Human Genetic Variation
Gil McVean (University of Oxford)
9:45
–
10:30 a.m.
Genetic Variation in Gene Regulation
Jonathan Pritchard, Stanford University
10:30
–
11 a.m.
Break
11
–
11:45 a.m.
A General Method for Calculating Likelihoods for Coalescence of Linear Genomes
Nick Barton (IST Austria)
11:45 a.m.
–
1:30 p.m.
Lunch
1:30
–
2:15 p.m.
Ancestral Population Genomics with Coalescent Hidden Markov Models
Thomas Mailund, Aarhus University
2:15
–
3 p.m.
Inferring the Past for Traits that Alter Speciation and Extinction
Sarah Otto, University of British Columbia
3
–
4:30 p.m.
Reception
Wednesday, Feb. 19, 2014
8:30
–
9 a.m.
Coffee and Check-In
9
–
9:45 a.m.
Population Genetics of the Neanderthal Genome Project
Montgomery Slatkin (UC Berkeley)
9:45
–
10:30 a.m.
Any Way You Want It: Applications of Whole Genome Capture to Ancient DNA, Metagenomics, and Orthogonal Validation
Carlos Bustamante, Stanford University
10:30
–
11 a.m.
Break
11
–
11:45 a.m.
Creating (and Mapping to) a Universal Reference Genome
David Haussler (UC Santa Cruz)
11:45 a.m.
–
1:30 p.m.
Lunch
1:30
–
2:15 p.m.
Algorithms for Genetic Selection
Vineet Bafna, UC San Diego
2:15
–
3 p.m.
Inference from Allele Frequency Time Series
Steven Evans (UC Berkeley)
3
–
3:30 p.m.
Break
3:30
–
4:15 p.m.
Coalescent Approaches to Selective Sweeps
Graham Coop (UC Davis)
4:15
–
5 p.m.
Natural Selection in a Spatial Continuum
Alison Etheridge (University of Oxford)
Thursday, Feb. 20, 2014
8:30
–
9 a.m.
Coffee and Check-In
9
–
9:45 a.m.
Some Tight Bounds in Recovering Species Trees and Population Histories
Elchanan Mossel (Massachusetts Institute of Technology)
9:45
–
10:30 a.m.
Robust Demographic Inference from Genomic and SNP Data
Laurent Excoffier, University of Bern
10:30
–
11 a.m.
Break
11
–
11:55 a.m.
Calculation of Joint Allelic Spectra
Nick Patterson (Broad Institute)
11:55 a.m.
–
1:30 p.m.
Lunch
1:30
–
2:15 p.m.
Analysis of Haplotype Sharing and Recent Demographic History with Examples from the Netherlands
Itsik Pe'er, Columbia University
2:15
–
3 p.m.
Probabilistic Models for Spatial Geographic Localization
Eran Halperin (Tel Aviv University)
3
–
3:30 p.m.
Break
3:30
–
4:15 p.m.
Quantifying the Extent of Geographic Signature in the Human Genome
Lior Pachter (California Institute of Technology)
4:15
–
5 p.m.
Mutation Rates and Generation Times in Humans
Molly Przeworski, Columbia University
Friday, Feb. 21, 2014
8:30
–
9 a.m.
Coffee and Check-In
9
–
9:45 a.m.
A Tree-based Approach to Inferring Past Population Size Changes and Separation Times
Simon Myers, University of Oxford
9:45
–
10:30 a.m.
Correcting for Confounding in Genetic Studies
Eleazar Eskin (University of California, Los Angeles)
10:30
–
11 a.m.
Break
11
–
11:45 a.m.
Identifying Recombination Hot Spots from Sequence Polymorphism Data
Jeff Wall, UCSF
11:45 a.m.
–
1:30 p.m.
Lunch
1:30
–
2:15 p.m.
The Impact of Recent Human Demography on Deleterious Mutation Load and the Genetic Architecture of Disease Susceptibility
Guy Sella, Columbia University
2:15
–
3 p.m.
Coancestry in the Analysis of Genetic Traits
Elizabeth Thompson, University of Washington
3
–
3:30 p.m.
Break
3:30
–
4:15 p.m.
Crowd-sourcing Genetic Discovery
Nicholas Eriksson, 23andMe
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