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New Directions in Probabilistic Models of Evolution
Program
Evolutionary Biology and the Theory of Computing
Location
Calvin Lab Auditorium
Date
Monday, Apr. 28
–
Friday, May 2, 2014
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The Workshop
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Click on the titles of individual talks for abstract, slides and archived video.
All events take place in the Calvin Lab Auditorium.
Monday, Apr. 28, 2014
8:30
–
8:50 a.m.
Coffee and Check-In
8:50
–
9 a.m.
Opening Remarks
9
–
9:40 a.m.
The Role of Deleterious Mutations in Influenza’s Antigenic Evolution
Katia Koelle, Duke University
9:50
–
10:30 a.m.
New Methods for Inferring Species Trees in the Presence of Gene Tree Conflict Due to Incomplete Lineage Sorting
Tandy Warnow, University of Texas, Austin
10:30
–
11 a.m.
Break
11
–
11:40 a.m.
Individual Stochasticity and Demographic Dynamics
Ulrich Steiner, Max-Planck Odense Center on the Biodemography of Aging
12
–
2 p.m.
Lunch
2
–
2:40 p.m.
Automatic Reconstruction of Ancient Languages
Dan Klein, UC Berkeley
2:50
–
3:30 p.m.
Modeling the Evolution of Genes and Genomes in the Presence of ILS and Hybridization
Luay Nakhleh, Rice University
3:30
–
4 p.m.
Break
4
–
4:40 p.m.
Accounting for Gene Tree Estimation Error in Species Tree Reconstruction: Quantity Versus Quality
Sebastien Roch (University of Wisconsin-Madison)
4:50
–
6 p.m.
Reception
Tuesday, Apr. 29, 2014
8:30
–
9 a.m.
Coffee and Check-In
9
–
9:40 a.m.
Genetic Diversity in the Interference Selection Limit
Michael Desai (Harvard University)
9:50
–
10:30 a.m.
The Acceleration of Evolutionary Spread by Long-Range Dispersal
Oskar Hallatschek (UC Berkeley)
10:30
–
11 a.m.
Break
11
–
11:40 a.m.
Evolutionary Dynamics of Large Sexual Populations: Some Needs and Challenges
Daniel Fisher (Stanford University)
12
–
2 p.m.
Lunch
2
–
2:40 p.m.
A Spatial Model of Carcinogenesis
Jasmine Foo, University of Minnesota
2:50
–
3:30 p.m.
Tracking the Invisible: A Probabilistic Approach to Field Cancerization
Rick Durrett (Duke University)
,
Marc Ryser, Duke University
3:30
–
4 p.m.
Break
4
–
4:40 p.m.
Hindering Evolution in Prostate Cancer
David Basanta, H. Lee Moffitt Cancer Center & Research Institute
Wednesday, Apr. 30, 2014
8:30
–
9 a.m.
Coffee and Check-In
9
–
9:40 a.m.
Evolutionary Rescue in Structured Populations
Joachim Hermisson (University of Vienna)
9:50
–
10:30 a.m.
The Duration of a Selective Sweep in a Structured Population
Peter Pfaffelhuber (Freiburg University)
10:30
–
11 a.m.
Break
11
–
11:40 a.m.
Ancestral Features of Multitype Branching Trees
Lea Popovic (Concordia University)
12
–
2 p.m.
Lunch
2
–
2:40 p.m.
From Individual-based Population Models to Lineage-based Models of Phylogenetic Trees
Amaury Lambert, Université Pierre et Marie Curie and Collège de France
Thursday, May 1, 2014
9
–
9:30 a.m.
Coffee and Check-In
9:30
–
10:10 a.m.
Modeling the Evolution of Within-host Reproductive Rates in Pathogens
Jonathan Dushoff, McMaster University
10:20
–
11 a.m.
Probabilistic Models for Pathogen Evolution Within and Between Hosts
Shishi Luo (UC Berkeley)
11
–
11:30 a.m.
Break
11:30 a.m.
–
12:10 p.m.
Mutation and Site-specific Selection Driving B Cell Affinity Maturation is Consistent Across Individuals
Erick Matsen, Fred Hutchinson Cancer Research Center
12:30
–
2 p.m.
Lunch
2
–
2:40 p.m.
Tools for Understanding the Geography of Adaptation
Peter Ralph, University of Southern California
2:50
–
3:30 p.m.
Quantitative Trait Evolution when Mutations have Large Effects
Josh Schraiber, UC Berkeley
3:30
–
4 p.m.
Break
4
–
4:40 p.m.
Mathematical Problems in the Evolution of Senescence
David Steinsaltz, University of Oxford
Friday, May 2, 2014
9
–
9:30 a.m.
Coffee and Check-In
9:30
–
10:10 a.m.
Mutation Accumulation and Empirical Calibration
Kenneth Wachter, UC Berkeley
10:20
–
11 a.m.
Stochastic Environments and Evolution in Structured Populations
Shripad Tuljapurkar, Stanford University
11
–
11:30 a.m.
Break
11:30 a.m.
–
12:10 p.m.
Fitness Landscapes and Adaptive Evolution
Joachim Krug (University of Cologne)
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